PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA322G00001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NF-YB
Protein Properties Length: 219aa    MW: 24997.4 Da    PI: 6.3028
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA322G00001genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.17.9e-5638133297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisf+t+easdkcqrekrktingdd++wa++tlGfedyv plk+yl kyr++egek
  AA322G00001  38 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDIIWAITTLGFEDYVTPLKIYLCKYRDTEGEK 133
                  89*******************************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.8E-5531164IPR009072Histone-fold
SuperFamilySSF471131.09E-4140163IPR009072Histone-fold
PfamPF008083.7E-2843107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-187189No hitNo description
PROSITE patternPS0068507490IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-1890108No hitNo description
PRINTSPR006153.8E-18109127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTEESPEEDH GSPGATETNP GSPCLKNNNN NNNNNNNKEQ DRFLPIANVG RIMKKVLPGN  60
GKISKDAKET VQECVSEFIS FITGEASDKC QREKRKTING DDIIWAITTL GFEDYVTPLK  120
IYLCKYRDTE GEKVNSPKQQ RQQQQQQTQQ NNHYQFQEQQ EHNNNISCTS SSNLYISHHH  180
PSPFLPADHQ PFPNIAFSPK SLQKQFPQQH DNIDSIGQW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4538128292Transcription factor HapC (Eurofung)
4g92_B5e-4538128292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467247.11e-121PREDICTED: nuclear transcription factor Y subunit B-7 isoform X1
RefseqXP_010467249.11e-121PREDICTED: nuclear transcription factor Y subunit B-7 isoform X1
RefseqXP_010518434.11e-121PREDICTED: nuclear transcription factor Y subunit B-7-like
SwissprotQ9SIT91e-122NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLV4NWB61e-120V4NWB6_EUTSA; Uncharacterized protein
STRINGAT2G13570.11e-119(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.11e-111nuclear factor Y, subunit B7